2024 |
Scrum@PA: Tailoring an Agile Methodology to the Digital Transformation in the Public Sector |
Articolo in rivista |
Vai |
2024 |
Digital Transformation in the Public Administrations: A Guided Tour for Computer Scientists |
Articolo in rivista |
Vai |
2024 |
The role of classifiers and data complexity in learned Bloom filters: insights and recommendations |
Articolo in rivista |
Vai |
2023 |
Learned Sorted Table Search and Static Indexes in Small-Space Data Models †|
Articolo in rivista |
Vai |
2023 |
Neural networks as building blocks for the design of efficient learned indexes |
Articolo in rivista |
Vai |
2023 |
A new class of string transformations for compressed text indexing |
Articolo in rivista |
Vai |
2023 |
Correction to: Neural networks as building blocks for the design of efficient learned indexes |
Articolo in rivista |
Vai |
2023 |
Standard versus uniform binary search and their variants in learned static indexing: The case of the searching on sorted data benchmarking software platform |
Articolo in rivista |
Vai |
2022 |
On the Suitability of Neural Networks as Building Blocks for the Design of Efficient Learned Indexes |
Contributo in atti di convegno pubblicato in volume |
Vai |
2022 |
The power of word-frequency-based alignment-free functions: a comprehensive large-scale experimental analysis |
Articolo in rivista |
Vai |
2022 |
Topological ranks reveal functional knowledge encoded in biological networks: a comparative analysis |
Articolo in rivista |
Vai |
2022 |
Correction to: FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy |
Nota o commento |
Vai |
2022 |
Learned Sorted Table Search and Static Indexes in Small Model Space |
Contributo in atti di convegno pubblicato in volume |
Vai |
2022 |
An implementation of Generic Learned Static Sorted Sets Dictionaries |
Altro |
Vai |
2022 |
A Benchmarking Platform for Atomic Learned Indexes |
Altro |
Vai |
2021 |
Modified Search on Sorted Data Benchmark for Branchy vs Branchfree study. |
Altro |
Vai |
2021 |
A Learned Sorted Table Search Library |
Altro |
Vai |
2021 |
Alignment-free Genomic Analysis via a Big Data Spark Platform |
Articolo in rivista |
Vai |
2021 |
FASTA/Q data compressors for MapReduce-Hadoop genomics: space and time savings made easy |
Articolo in rivista |
Vai |
2020 |
The Alternating BWT: An algorithmic perspective |
Articolo in rivista |
Vai |
2019 |
Analyzing big datasets of genomic sequences: Fast and scalable collection of k-mer statistics |
Articolo in rivista |
Vai |
2019 |
A new class of searchable and provably highly compressible string transformations |
Contributo in atti di convegno pubblicato in volume |
Vai |
2019 |
DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes |
Articolo in rivista |
Vai |
2018 |
Block Sorting-Based Transformations on Words: Beyond the Magic BWT |
Contributo in atti di convegno pubblicato in volume |
Vai |
2018 |
Informational and linguistic analysis of large genomic sequence collections via efficient Hadoop cluster algorithms |
Articolo in rivista |
Vai |
2018 |
In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes |
Articolo in rivista |
Vai |
2017 |
Network Centralities and Node Ranking |
Capitolo o Saggio |
Vai |
2017 |
FASTdoop: A versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications |
Articolo in rivista |
Vai |
2017 |
MapReduce in Computational Biology Via Hadoop and Spark |
Capitolo o Saggio |
Vai |
2017 |
Mapreduce in computational biology - A synopsis |
Capitolo o Saggio |
Vai |
2017 |
Computation Cluster Validation in the Big Data Era |
Capitolo o Saggio |
Vai |
2017 |
An effective extension of the applicability of alignment-free biological sequence comparison algorithms with Hadoop |
Articolo in rivista |
Vai |
2016 |
Table Compression |
Capitolo o Saggio |
Vai |
2016 |
Indexed Two-Dimensional String Matching |
Capitolo o Saggio |
Vai |
2016 |
The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes |
Articolo in rivista |
Vai |
2015 |
Alignment-Free Sequence Comparison over Hadoop for Computational Biology |
Contributo in atti di convegno pubblicato in volume |
Vai |
2015 |
ValWorkBench: An open source Java library for cluster validation, with applications to microarray data analysis. |
Articolo in rivista |
Vai |
2015 |
Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning |
Articolo in rivista |
Vai |
2015 |
Bayesian versus data driven model selection for microarray data |
Articolo in rivista |
Vai |
2014 |
GIMT: A tool for ontology and goal modeling in BDI Multi-Agent Design |
Proceedings |
Vai |
2014 |
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies |
Articolo in rivista |
Vai |
2013 |
A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis |
Articolo in rivista |
Vai |
2013 |
Forewords-Special Issue Combinatorial Pattern Matching 2011 |
Articolo in rivista |
Vai |
2013 |
The Three Steps of Clustering in the Post-Genomic Era |
Capitolo o Saggio |
Vai |
2013 |
Algorithmics for the Life Sciences |
Capitolo o Saggio |
Vai |
2012 |
Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis. |
Articolo in rivista |
Vai |
2012 |
Stability-Based Model Selection for High Throughput Genomic Data: An Algorithmic Paradigm |
Capitolo o Saggio |
Vai |
2012 |
Textual data compression in computational biology: Algorithmic techniques. |
Articolo in rivista |
Vai |
2011 |
Speeding up the Consensus Clustering methodology for microarray data analysis |
Articolo in rivista |
Vai |
2011 |
Novel Combinatorial and Information Theoretic Alignment Free Distances for Biological Data Mining |
Capitolo o Saggio |
Vai |
2011 |
Algoritmica Per Le Scienze Della Vita |
Capitolo o Saggio |
Vai |
2011 |
The Three Steps of Clustering in the Post-Genomic Era: A Synopsis |
Contributo in atti di convegno pubblicato in volume |
Vai |
2011 |
The Three Steps of Clustering in the Post-Genomic Era: A Synopsis |
Contributo in atti di convegno pubblicato in volume |
Vai |
2011 |
Preface |
Capitolo o Saggio |
Vai |
2011 |
Genome-wide characterization of chromatin binding and nucleosome spacing activity of the nucleosome remodelling ATPase ISWI |
Articolo in rivista |
Vai |
2010 |
Functional Information, Biomolecular Messages and Complexity of BioSequences and Structures |
Proceedings |
Vai |
2010 |
Distance Functions, Clustering Algorithms and Microarray Data Analysis |
Contributo in atti di convegno pubblicato in volume |
Vai |
2009 |
Textual Data Compression In Computational Biology: A synopsis |
Articolo in rivista |
Vai |
2009 |
The Myriad Virtes of Wavelet Trees |
Articolo in rivista |
Vai |
2009 |
Statistical Indexes for Computational and Data Driven Class Discovery in Microarray Data |
Capitolo o Saggio |
Vai |
2009 |
Basic Statistical Indices for SeqAn |
Capitolo o Saggio |
Vai |
2008 |
Algorithms in Bioinformatics |
Articolo in rivista |
Vai |
2008 |
2D-Pattern Indexing |
Capitolo o Saggio |
Vai |
2008 |
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer |
Articolo in rivista |
Vai |
2008 |
New Results in Finding Common Neighborhoods in Massive Graphs in the Data Streaming Model |
Articolo in rivista |
Vai |
2008 |
Table Compression |
Capitolo o Saggio |
Vai |
2008 |
A Tutorial on Computational Cluster Analysis with Applications to Pattern Discovery in Microarray Data |
Articolo in rivista |
Vai |
2008 |
Periodicity and repetitions in parameterized strings |
Articolo in rivista |
Vai |
2008 |
Grid-K: A Cometa Virtual Organization Service for Compressio-Based Classification of Biological Sequences and Structures |
Proceedings |
Vai |
2008 |
SAIL: String Algorithms, Information and Learning, Preface and Special Issue |
Articolo in rivista |
Vai |
2007 |
$O(n^2 log
n)$ Time On-line Construction of Two-Dimensional Suffix Trees |
Articolo in rivista |
Vai |
2007 |
Articles selected from posters presented at the Tenth Annual International Conference on Research in Computational Biology - Preface |
Articolo in rivista |
Vai |
2007 |
Forewords |
Articolo in rivista |
Vai |
2007 |
A basic analysis toolkit for biological sequences |
Articolo in rivista |
Vai |
2007 |
Compression-Based Classification of Biological Sequences
and Structures via the Universal Similarity Metric: Experimental
Assessment |
Articolo in rivista |
Vai |
2007 |
From First Principles to the Burrows
and Wheeler Transform and Beyond, via Combinatorial Optimization |
Articolo in rivista |
Vai |
2006 |
Differential Expression of Proteolytic Enzymes During
Epithelia-Mesenchyma Transcation of Endothelial Cells |
Articolo in rivista |
Vai |
2006 |
Differential expression of proteolytic enzymes during epithelial-mesenchymal transaction of endothelial cells. |
Proceedings |
Vai |
2006 |
The
Engineering of a Compression Booster: Theory Vs Practice in BWT
Compression |
Articolo in rivista |
Vai |
2006 |
The Myriad Virtues of Suffix Trees |
Capitolo o Saggio |
Vai |
2005 |
Pattern Discovery in the Post-Genome |
Articolo in rivista |
Vai |
2005 |
GenClust: A Genetic Algorithm for Clustering Gene Expression Data |
Articolo in rivista |
Vai |
2005 |
An O(n^2log n) Time on-line construction of two-dimensional suffix trees |
Articolo in rivista |
Vai |
2005 |
Boosting Textual Compression in Optimal Linear Time |
Articolo in rivista |
Vai |
2004 |
Permutations, Partitions and Combinatorial Compression Boosting |
Articolo in rivista |
Vai |
2004 |
Longest Motifs with a Functionally Equivalent Central Block |
Articolo in rivista |
Vai |
2004 |
Pattern Matching Algorithms |
Articolo in rivista |
Vai |