MUGI-MRI: Enhancing Breast Cancer Classification through Multiplex Graph Neural Networks in DCE-MRI

Abstract

Dynamic Contrast-Enhanced Magnetic Resonance Imaging (DCE-MRI) involves acquiring a sequence of MRIs during the administration of a contrast agent. Radiologists then aim to discern the contrast uptake differences between malignant and benign lesions for tumor classification. Regrettably, existing literature underutilizes the temporal structure inherent to DCEMRI time series, leading to tumor classifications based on individual instants rather than entire sequences. This research introduces two Graph Neural Network (GNN)-based methods designed to aggregate information from multiple instants within the DCE-MRI sequence. Each lesion undergoes manual segmentation, and radiomic features are individually extracted from each time instant of the DCE-MRI sequence. Two graph construction methodologies are proposed: (i) a fully connected graph topology, aiming to represent each temporal instant as a node in a graph; (ii) a multiplex network, named MUGI-MRI (MUltiplex Graph neural network for Integration of MRI), where each layer identifies an instant of the DCE-MRI sequence. MUGI-MRI achieves an AUROC of 0.8017 ± 0.1146, showcasing promising performance in lesion classification. In addition to improving upon current state-of-the-art, the integration capability of MUGIMRI addresses the problem of imbalance between sensitivity and specificity, which affects numerous studies in the realm of DCE-MRI. Our findings strongly indicate that the aggregation of information across all time instants is pivotal for enhancing the diagnostic process, and vastly superior to a simplistic instant-wise analysis. While applied to MRI sequences, our approach can be extended to general problems of multimodal data integration.